hdf error #56
Description
It's the first time of observing this error when loading fcs files. Have been googling but no clue how to fix it.
FCS_files = read.ncdfFlowSet(files = meta$FileName, channels = panel$name, ignore.text.offset = TRUE, transformation = FALSE, truncate_max_range = FALSE)
"write export_032118 ITN10290 tet V1 post_DR3_EBVJY134.fcs to empty cdf slot...
write export_032118 ITN10290 tet V1 post_DR3_FluBHAp44.fcs to empty cdf slot...
write export_032118 ITN10290 tet V1 post_DR3_Phlp1p22.fcs to empty cdf slot...
write export_032118 ITN10290 tet V1 post_DR3_Phlp5bp3.fcs to empty cdf slot...
write export_032118 ITN10290 tet V1 post_DR3_RVVP2p21.fcs to empty cdf slot...
write export_032118 ITN10290 tet V1 post_DR3_TTHp7.fcs to empty cdf slot...
write export_032118 ITN10290 tet V106 post_DR3_EBVJY134.fcs to empty cdf slot...
write export_032118 ITN10290 tet V106 post_DR3_FluBHAp44.fcs to empty cdf slot...
updating export_032118 ITN10290 tet V106 post_DR3_Phlp1p22.fcs...
error #000: in H5Pset_chunk(): line 2025
major: Invalid arguments to routine
minor: Out of range
Error in writeSlice(ncfs@file, newData, as.integer(chIndx), as.integer(sampleInd), :
hdf Error
In addition: There were 16 warnings (use warnings() to see them)"
warnings()
"Warning messages:
1: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4329:4328) to read the data. The values in TEXT are ignored!
2: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10004:10003) to read the data. The values in TEXT are ignored!
3: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4326:4325) to read the data. The values in TEXT are ignored!
4: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10001:10000) to read the data. The values in TEXT are ignored!
5: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4344:4343) to read the data. The values in TEXT are ignored!
6: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10019:10018) to read the data. The values in TEXT are ignored!
7: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4342:4341) to read the data. The values in TEXT are ignored!
8: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10017:10016) to read the data. The values in TEXT are ignored!
9: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4339:4338) to read the data. The values in TEXT are ignored!
10: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10014:10013) to read the data. The values in TEXT are ignored!
11: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4336:4335) to read the data. The values in TEXT are ignored!
12: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10011:10010) to read the data. The values in TEXT are ignored!
13: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4328:4327) to read the data. The values in TEXT are ignored!
14: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10003:10002) to read the data. The values in TEXT are ignored!
15: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different starting point (4340:4339) to read the data. The values in TEXT are ignored!
16: In checkOffset(offsets, txt, ...) :
The HEADER and the TEXT segment define different ending point (10015:10014) to read the data. The values in TEXT are ignored!"