Skip to content
@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

Pinned Loading

  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 174 33

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 97 28

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 119 32

  4. Hotspot Hotspot Public

    Python 140 16

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 4

  6. popV popV Public

    Python 85 19

Repositories

Showing 10 of 68 repositories
  • Thymus_CITE-seq Public
    YosefLab/Thymus_CITE-seq’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Dec 27, 2025
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 80 BSD-3-Clause 20 7 2 Updated Dec 23, 2025
  • destvi_utils Public

    Utilities for downstream analysis of destVI

    YosefLab/destvi_utils’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 1 Updated Dec 22, 2025
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 7 BSD-3-Clause 3 0 2 Updated Dec 22, 2025
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 40 BSD-3-Clause 7 8 2 Updated Dec 22, 2025
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 85 MIT 19 2 3 Updated Dec 22, 2025
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 4 BSD-3-Clause 2 0 1 Updated Dec 12, 2025
  • Harreman Public

    Harreman infers metabolic exchanges in tissues using spatial transcriptomics.

    YosefLab/Harreman’s past year of commit activity
    Python 3 BSD-3-Clause 1 0 0 Updated Dec 9, 2025
  • mrvi_archive Public

    Multi-resolution Variational Inference

    YosefLab/mrvi_archive’s past year of commit activity
    Python 22 BSD-3-Clause 8 2 1 Updated Dec 8, 2025
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    YosefLab/Cassiopeia’s past year of commit activity
    Python 97 MIT 28 23 (3 issues need help) 13 Updated Dec 8, 2025
View all repositories

Most used topics

Loading…