Not reading .gz files

[forsterr]

I had to reinstall fastool. My previous installation was converting .fastq.gz files to fasta. The reinstall returns Sequences parsed: 0 It works after manually gunzip input files to fastq

[fstrozzi]

Hi,
reading directly from gzipped files was dropped in latest release due to problems with newer and older zlib versions. Please check https://github.com/fstrozzi/Fastool/releases/tag/0.1.4
Fastool can also read from stdin so the recommended way is to use pipes and something like zcat or pigz to read your compressed FastQ files.

[forsterr]

Thanks for your quick reply!

Bob

From: Francesco Strozzi [mailto:notifications@github.com]
Sent: July-11-14 9:54 AM
To: fstrozzi/Fastool
Cc: Forster, Robert
Subject: Re: [Fastool] Not reading .gz files (#3)

Hi,
reading directly from gzipped files was dropped in latest release due to problems with newer and older zlib versions. Please check https://github.com/fstrozzi/Fastool/releases/tag/0.1.4
Fastool can also read from stdin so the recommended way is to use pipes and something like zcat or pigz to read your compressed FastQ files.

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Reply to this email directly or view it on GitHubhttps://github.com//issues/3#issuecomment-48748058.