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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 23 32

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    40 49

Repositories

Showing 10 of 512 repositories
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 82 CC0-1.0 44 1,215 107 Updated Dec 26, 2025
  • zoe Public

    Zoe provides both broad and highly specialized implementations for bioinformatics. In particular, we focus on common data formats and methods relevant for the sequencing of RNA viruses.

    CDCgov/zoe’s past year of commit activity
    Rust 7 Apache-2.0 2 0 0 Updated Dec 26, 2025
  • phylophoenix Public

    🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

    CDCgov/phylophoenix’s past year of commit activity
    Python 9 Apache-2.0 0 4 1 Updated Dec 26, 2025
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 88 Apache-2.0 35 12 0 Updated Dec 26, 2025
  • stimulant_opioid_algorithm_medical_codes_R Public
    CDCgov/stimulant_opioid_algorithm_medical_codes_R’s past year of commit activity
    HTML 4 Apache-2.0 3 0 0 Updated Dec 25, 2025
  • eMKF Public
    CDCgov/eMKF’s past year of commit activity
    SAS 4 Apache-2.0 4 0 0 Updated Dec 25, 2025
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 7 8 0 0 Updated Dec 25, 2025
  • covid19-forecast-hub Public

    A repository run by the US CDC to collect forecasts of incident COVID-19 hospital admissions and emergency department visits.

    CDCgov/covid19-forecast-hub’s past year of commit activity
    R 20 Apache-2.0 30 17 4 Updated Dec 25, 2025
  • cdc-open-viz Public

    CDC OpenViz is a library of React packages for data visualization.

    CDCgov/cdc-open-viz’s past year of commit activity
    TypeScript 46 Apache-2.0 30 0 5 Updated Dec 24, 2025
  • pyrenew-hew Public

    Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.

    CDCgov/pyrenew-hew’s past year of commit activity
    Python 16 Apache-2.0 3 58 4 Updated Dec 24, 2025
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