Markdown Thesis

A simple build script for managing a thesis in markdown. You must have Pandoc installed to make use of it, as it effectively acts as a wrapper for a complex pandoc command.

Installation

1. Fork the repo or clone and set your own remote
2. In the repo run pip3 install -r requirements.txt to gather the python requirements for the build script

Use

Write in the src folder, in markdown. Name your chapters with the format chapter-X.md. You can then run build.py to build for various formats. You can build by either entire thesis + format or chapter + format. e.g. ./build.py chapter 1 html produces a HTML rendering of Chapter 1, ./build.py chapter 6 odt will give you an OpenDocument file of Chapter 6.

Since you're using pandoc under the hood it will accept all formats pandoc can convert to from markdown. PDF rendering is done via HTML5 as LaTeX doesn't like SVG files naturally; this may change with an update and custom latex templates.

The two main commands:

• build.py chapter X $FORMAT builds src/chapter-X.md in $FORMAT
• build.py thesis $FORMAT builds the whole thesis in $FORMAT

There are three additional commands:

• build.py chapters $FORMAT generates every chapter individually in the given format.
• build.py frontmatter $FORMAT generates a frontmatter file from src/frontmatter.md in $FORMAT
• build.py website generates a website with coversheet. Example output at: thesis.mrshll.uk. This takes a few variables to set a few things.

Scripts will build into an out directory and then a subdirectory for their specific format e.g. out/html or out/odt. /out is ignored by git, so you need to run a build script to acquire the desired format.

Currently the script enables --toc to its default depth to generate a table of contents, and also --number-sections. For some reason the latter only works in the HTML rendering!

/templates currently contains the coversheet template used by the website command but may in future contain custom LaTeX templates for nice PDF rendering. Pandoc is run with the --self-contained flag to pull in any resources to the output file.

Variables

Use src/index.md to set the variables for your thesis and build scripts. Most of these variables come from the pandoc docs and are collected in src/index.md so that they don't need to be repeated across multiple files or embedded in build.py. When building a file, src/index.md will always be included first to pull in these variables.

Pandoc Variables

• title sets the title of your thesis
• author your author name
• bibliography is the file where your bibtex file lives; it's automatically set to src/thesis.bib
• css is a YAML List of css files. By default src/pure-min.css and src/styles.css are included. If you want to add more layers of css or change some around; here's where to do it.
• link-citations is defaulted to true. Setting to false will mean that citations in generated files will not be hyperlinked to their entries in your bibliography.
• csl sets the style file for your bibliography. It's defaulted to src/harvard-newcastle-university.csl. You can find others here.

Custom variables

The build script uses a few more variables to support it generating the website via the website command.

• thesis-source is a URL which can take people to the git repo where you store your thesis
• download-button-format takes a format string (e.g. odt or docx) and set the target of the Download Button on the website homepage
• website-build-formats is a YAML list of formats that you want your thesis to be available in via the generated website. By default odt and docx are included, but it will take any valid pandoc format.

HTML Styles

Most styles are provided by PureCSS. This provides a minimal and responsive html page; which is really what this script is optimised for. There are additional styles for both print and web contained in styles.css which are designed to make everything look just a bit nicer. Pandoc cannot generate PureCSS classes and grids by default so these styles make text a bit more readable and make tables, quotes, and images read a bit better.

The pages are mostly responsive insofar as they're pretty brutalist and rely on HTML's natural scalability to fit onto most viewscreens. On mobile the margin is a tad wider than it needs to be, and if this bothers you adjust it in src/styles.css

Tips for writing

• Make sure to grab a copy of BetterBibTeX for Zotero to handle generating nicer citation keys.

Acknowledgements

This thesis repository structure re-uses the scripts and structural approach of Matt Marshall and his repo at https://gitlab.com/mrshll1001/markdown-thesis - thanks Marshall!