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Look into SBOL compatibility for DNA assemblies

Status: Open.

#35 In BuildACell/txtlsim-python;

· murrayrm opened on Sep 26, 2018

9-25 Meeting Recap: Code Clean-up

Status: Open.

#34 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 26, 2018

Why does the CDS part of a DNA Assembly have a dimerize parameter? A maturation time parameters?

Status: Open.

#33 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 24, 2018

Why is Concentration being passed around in update_species and update_reactions?

Status: Open.

#32 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 24, 2018

In Component.update_reactions parameters are being copied and re-updated in a way I don't understand

Status: Open.

#31 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 24, 2018

Why are we creating config files when components are instantiated?

Status: Open.

#30 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 24, 2018

Class Structure for DNA and DNA Assembly

Status: Open.

#29 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 20, 2018

Add component types as subclasses: mRNA, Protein, Small Molecule.

Status: Open.

#28 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 19, 2018

High Level Design Document

Status: Open.

#25 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 14, 2018

What will our "Gold Standard Be" in terms of unit tests?

Status: Open.

#23 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 13, 2018

How do we detect compilation loops?

Status: Open.

#22 In BuildACell/txtlsim-python;

· WilliamIX opened on Sep 12, 2018

Decide how to best handle parameter files and implement

Status: Open.

#19 In BuildACell/txtlsim-python;

· murrayrm opened on Sep 12, 2018